- N.A.S.A.
- Spirit of Apollo
- 2009
- Piano (Grand)
- N.A.S.A.
- Spirit of Apollo
- 2009
- Vocals
- Roy Orbison
- Soul of Rock and Roll
- 2008
- Author, Organ
- Atmosphere
- When Life Gives You Lemons, You Paint That Shit Gold (Deluxe Edition)(with DVD)
- 2008
- Beat Box
- Tom Waits
- Beautiful Maladies: The Island Years (Japan)
- 2008
- Banjo, Piano, Stick, Vocals, Producer, Organ (Pump), Bass (Upright), Guitar, Organ, Optigan
- Various Artists
- People Take Warning! Murder Ballads & Disaster Songs 1913-1938
- 2007
- Author, Introduction
- C.R. Avery
- Magic Hour Sailor Songs
- 2007
- Author
- The Book of Knots
- Traineater
- 2007
- Guest Appearance, Guitar, Percussion, Vocals
- Tom Waits
- Orphans: Brawlers, Bawlers & Bastards
- 2006
- Arranger, Guitar, Keyboards, Organ (Pump), Vocals, Producer, Percussion
- Primus
- They Can't All Be Zingers
- 2006
- Mellotron, Producer, Voices, Vocals
- Various Artists
- American Music: The Hightone Records Story (Box Set)
- 2006
- Guitar, Vocals
- Various Artists
- Red Hot + Blue (DVD/CD)
- 2006
- Chamberlin, Producer, Vocals, Percussion
- Roy Orbison
- Essential Roy Orbison
- 2006
- Guitar
- Movie Soundtrack
- Tiger und der Schnee
- 2006
- Piano, Vocals
- The Pogues
- Trilogy
- 2006
- Liner Notes
- Primus
- They Can't All Be Zingers (Best Buy Exclusive)
- 2006
- Mellotron, Producer, Vocals
- Thomas Newman
- Jarhead
- 2005
- Performer
- Eels
- Blinking Lights and Other Revelations
- 2005
- Performer
- The Pogues
- Rum Sodomy & the Lash (Bonus Tracks)
- 2005
- Introduction
- The Pogues
- Waiting for Herb (US Bonus Tracks)
- 2005
- Liner Notes
- The Pogues
- Rum Sodomy & the Lash (Bonus Tracks)
- 2005
- Poetry, Liner Notes
- The Pogues
- Hell's Ditch (Bonus Tracks)
- 2005
- Liner Notes
- Various Artists
- We Get a Kick Out of Jazz
- 2005
- Guitar, Vocals
- The Five Blind Boys of Alabama
- Go Tell It on the Mountain (Bonus Track)
- 2004
- Guest Appearance
- Various Artists
- Late Great Daniel Johnston: Discovered Covered
- 2004
- Producer
- Various Artists
- Late Great Daniel Johnston: Discovered Covered
- 2004
- Mouth Percussion, Percussion, Musician
- Danny Cohen
- Dannyland
- 2004
- Author
- Movie Soundtrack
- Shrek 2 (Original Soundtrack)
- 2004
- Performer, Vocals
- Tom Waits
- One from the Heart (Bonus Tracks)
- 2004
- Orchestral Arrangements, Piano, Vocals
- Various Artists
- Where We Live
- 2003
- Producer
- The Five Blind Boys of Alabama
- Go Tell It on the Mountain
- 2003
- Guest Appearance, Vocals
- Various Artists
- Darker Blues
- 2003
- Author
- Tom Waits
- Mule Variations (Japan Bonus Tracks)
- 2003
- Chamberlin, Organ, Optigan, Guitar, Organ (Pump), Piano, Vocals, Producer, Percussion
- Various Artists
- Rough Trade Shops: Counter Culture
- 2003
- Producer
- John Hammond, Jr.
- Ready for Love
- 2003
- Liner Notes
- Various Artists
- For the Kids (Nettwerk)
- 2002
- Piano, Producer, Vocals
- Various Artists
- Jazz Singing
- 2002
- Guitar, Vocals
- Roberto Benigni
- Roberto Benigni e la Musica
- 2002
- Author
- Muse
- Hullabaloo Soundtrack
- 2002
- Performer
- Tom Waits
- Alice
- 2002
- Chamberlin, Mellotron, Main Performer, Glockenspiel, Organ (Pump), Producer, Violin
- Tom Waits
- Blood Money
- 2002
- Producer, Piano, Organ (Pump), Main Performer, Guitar (Electric), Guitar (Acoustic), Chamberlin, Calliope
- Tom Waits
- Blood Money
- 2002
- Vocals, Toy Piano
- Various Artists
- Balling the Jack: Birth of Nu-Blues
- 2002
- Guitar, Vocals
- Movie Soundtrack
- Big Bad Love
- 2002
- Guitar, Producer, Vocals
- Muse
- Hullabaloo Soundtrack (Australia)
- 2002
- Composer, Performer
- Tom Waits
- Dime Store Novels, Vol. 1
- 2001
- Main Performer
- Tom Waits
- Used Songs (1973-1980)
- 2001
- Guitar (Acoustic), Guitar (Electric), Main Performer, Vocals, Piano
- Dave Douglas
- Witness
- 2001
- Vocals, Voices
- Sparklehorse
- It's a Wonderful Life
- 2001
- Sounds
- John Hammond, Jr.
- Wicked Grin
- 2001
- Guitar, Producer, Handclapping
- Jeff Beal
- Pollock (Original Soundtrack)
- 2001
- Producer
- Dan Hicks
- Beatin' the Heat (Japan Bonus Track)
- 2001
- Vocals
- Various Artists
- Coded
- 2000
- Performer
- Various Artists
- Free the West Memphis 3
- 2000
- Performer
- Dan Hicks
- Beatin' the Heat
- 2000
- Vocals
- Tom Waits
- Hold On (4 Tracks)
- 2000
- Bass, Main Performer, Guitar, Organ, Vocals
- Movie Soundtrack
- Keeping the Faith
- 2000
- Performer
- Tin Hat Trio
- Helium
- 2000
- Performer
- Various Artists
- Seka: Sister, Vol. 2
- 2000
- Performer
- Movie Soundtrack
- Gun Shy
- 2000
- Performer
- Movie Soundtrack
- Liberty Heights (Original Soundtrack)
- 2000
- Composer, Performer, Producer, Piano, Vocals, Train Whistle, Shaker
- Various Artists
- Folkscene Collection, Vol. 2
- 1999
- Guitar
- Various Artists
- Folkscene Collection, Vol. 2
- 1999
- Performer, Vocals
- Jack Kerouac
- Reads on the Road
- 1999
- Guitar, Percussion, Vocals
- Various Artists
- More Oar: A Tribute to Alexander "Skip" Spence
- 1999
- Drums, Vocals, Producer, Guitar, Maracas, Performer
- Various Artists
- Punk-O-Rama, Vol. 4
- 1999
- Performer
- Various Artists
- Pearls in the Snow: The Songs of Kinky Friedman
- 1999
- Arranger, Producer
- Various Artists
- Earth, The Creative Planet
- 1999
- Performer
- Various Artists
- Pearls in the Snow: The Songs of Kinky Friedman
- 1999
- Banjo
- Tom Waits
- Mule Variations
- 1999
- Main Performer, Producer
- Various Artists
- IFC: In Your Ear, Vol. 1
- 1999
- Performer
- Chuck E. Weiss
- Extremely Cool
- 1999
- Executive Producer, Guitar, Producer, Vocals
- Phoebus Delivorias
- Awful
- 1999
- ?
- Tom Waits
- Bunny (Score)
- 1999
- Composer, Main Performer, Piano, Score
- Various Artists
- Hightone Records: 15 Years of American Music
- 1999
- ?
- Movie Soundtrack
- Condo Painting
- 1998
- Performer
- Various Artists
- Rare on Air, Vol. 4
- 1998
- Performer, Vocals, Piano
- Roy Orbison
- Limited Edition Box Set
- 1998
- Musician
- Various Artists
- Orbitones, Spoon Harps & Bellowphones
- 1998
- Performer
- Tom Waits
- Best of Tom Waits
- 1998
- Main Performer
- John Lurie
- Fishing with John (TV Soundtrack)
- 1998
- Vocals
- Tom Waits
- Beautiful Maladies: The Island Years
- 1998
- Banjo, Main Performer, Organ, Percussion, Producer, Vocals, Stick, Piano, Organ (Pump), Optigan, Illustrations, Conga, Chamberlin
- Ramblin' Jack Elliott
- Friends of Mine
- 1998
- Guitar, Vocals
- Roy Orbison
- Black & White Night (1998)
- 1998
- ?, Musician
- Various Artists
- Monsters of Folk
- 1998
- Performer
- Various Artists
- 15 Years of American Music
- 1998
- Performer
- Various Artists
- City Lights (Mercury)
- 1998
- Producer
- Various Artists
- Club Tenco, Vol. 2: Vent'anni Di Canzone d'Autore
- 1997
- Design
- Movie Soundtrack
- End of Violence
- 1997
- Performer, Producer
- Movie Soundtrack
- Dead Man Walking (Original Soundtrack + DVD)
- 1997
- Guitar, Vocals, Producer
- Various Artists
- Dead & Gone #1: Trauermärsche - Funeral Marches
- 1997
- Performer
- Bart Hopkins
- Gravikords, Whirlies, and Pyrophones (Experimental Musical Instruments)
- 1996
- Liner Notes
- Movie Soundtrack
- Basquiat
- 1996
- Performer
- Cibo Matto
- Viva! La Woman
- 1996
- ?
- Movie Soundtrack
- Dead Man Walking (Original Soundtrack) (1996)
- 1996
- Guitar, Performer, Producer, Vocals
- Paul Buckmaster
- 12 Monkeys
- 1995
- Performer
- Movie Soundtrack
- Things to Do in Denver When You're Dead
- 1995
- Performer, Songwriter, Vocals
- Various Artists
- Alternative Rock Hits
- 1995
- Performer
- Movie Soundtrack
- Smoke (Original Soundtrack)
- 1995
- Performer
- Tom Waits
- Black Rider
- 1993

























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